The Planteome databasean integrated resource for reference ontologies, plant genomics and phenomics

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The Planteome database : an integrated resource for reference ontologies, plant genomics and phenomics. / Cooper, Laurel; Meier, Austin; Laporte, Marie-Angélique ; Elser, Justin L.; Mungall, Chris; Sinn, Brandon T.; Cabaliere, Dario; Carbon, Seth; Dunn, Nathan A.; Smith, Barry; Qu, Botong; Preece, Justin; Zhang, Eugene; Todorovic, Sinisa; Gkoutos, Georgios; Doonan, John; Stevenson, Dennis W.; Arnaud, Elizabeth; Jaiswal, Pankaj.

In: Nucleic Acids Research, 23.11.2017.

Research output: Contribution to journalArticle

Harvard

Cooper, L, Meier, A, Laporte, M-A, Elser, JL, Mungall, C, Sinn, BT, Cabaliere, D, Carbon, S, Dunn, NA, Smith, B, Qu, B, Preece, J, Zhang, E, Todorovic, S, Gkoutos, G, Doonan, J, Stevenson, DW, Arnaud, E & Jaiswal, P 2017, 'The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics' Nucleic Acids Research. https://doi.org/10.1093/nar/gkx1152

APA

Cooper, L., Meier, A., Laporte, M-A., Elser, J. L., Mungall, C., Sinn, B. T., ... Jaiswal, P. (2017). The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics. Nucleic Acids Research, [gkx1152]. https://doi.org/10.1093/nar/gkx1152

Vancouver

Cooper L, Meier A, Laporte M-A, Elser JL, Mungall C, Sinn BT et al. The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics. Nucleic Acids Research. 2017 Nov 23. gkx1152. https://doi.org/10.1093/nar/gkx1152

Author

Cooper, Laurel ; Meier, Austin ; Laporte, Marie-Angélique ; Elser, Justin L. ; Mungall, Chris ; Sinn, Brandon T. ; Cabaliere, Dario ; Carbon, Seth ; Dunn, Nathan A. ; Smith, Barry ; Qu, Botong ; Preece, Justin ; Zhang, Eugene ; Todorovic, Sinisa ; Gkoutos, Georgios ; Doonan, John ; Stevenson, Dennis W. ; Arnaud, Elizabeth ; Jaiswal, Pankaj. / The Planteome database : an integrated resource for reference ontologies, plant genomics and phenomics. In: Nucleic Acids Research. 2017.

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@article{662d40b01c0a4d2a95265faf1e6d927d,
title = "The Planteome database: an integrated resource for reference ontologies, plant genomics and phenomics",
abstract = "The Planteome project (http://www.planteome.org) provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics data. The reference ontologies include the Plant Ontology, Plant Trait Ontology and the Plant Experimental Conditions Ontology developed by the Planteome project, along with the Gene Ontology, Chemical Entities of Biological Interest, Phenotype and Attribute Ontology, and others. The project also provides access to species-specific Crop Ontologies developed by various plant breeding and research communities from around the world. We provide integrated data on plant traits, phenotypes, and gene function and expression from 95 plant taxa, annotated with reference ontology terms. The Planteome project is developing a plant gene annotation platform; Planteome Noctua, to facilitate community engagement. All the Planteome ontologies are publicly available and are maintained at the Planteome GitHub site (https://github.com/Planteome) for sharing, tracking revisions and new requests. The annotated data are freely accessible from the ontology browser (http://browser.planteome.org/amigo) and our data repository",
author = "Laurel Cooper and Austin Meier and Marie-Ang{\'e}lique Laporte and Elser, {Justin L.} and Chris Mungall and Sinn, {Brandon T.} and Dario Cabaliere and Seth Carbon and Dunn, {Nathan A.} and Barry Smith and Botong Qu and Justin Preece and Eugene Zhang and Sinisa Todorovic and Georgios Gkoutos and John Doonan and Stevenson, {Dennis W.} and Elizabeth Arnaud and Pankaj Jaiswal",
year = "2017",
month = "11",
day = "23",
doi = "10.1093/nar/gkx1152",
language = "English",
journal = "Nucleic Acids Research",
issn = "0305-1048",
publisher = "Oxford University Press",

}

RIS (suitable for import to EndNote) - Download

TY - JOUR

T1 - The Planteome database

T2 - an integrated resource for reference ontologies, plant genomics and phenomics

AU - Cooper, Laurel

AU - Meier, Austin

AU - Laporte, Marie-Angélique

AU - Elser, Justin L.

AU - Mungall, Chris

AU - Sinn, Brandon T.

AU - Cabaliere, Dario

AU - Carbon, Seth

AU - Dunn, Nathan A.

AU - Smith, Barry

AU - Qu, Botong

AU - Preece, Justin

AU - Zhang, Eugene

AU - Todorovic, Sinisa

AU - Gkoutos, Georgios

AU - Doonan, John

AU - Stevenson, Dennis W.

AU - Arnaud, Elizabeth

AU - Jaiswal, Pankaj

PY - 2017/11/23

Y1 - 2017/11/23

N2 - The Planteome project (http://www.planteome.org) provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics data. The reference ontologies include the Plant Ontology, Plant Trait Ontology and the Plant Experimental Conditions Ontology developed by the Planteome project, along with the Gene Ontology, Chemical Entities of Biological Interest, Phenotype and Attribute Ontology, and others. The project also provides access to species-specific Crop Ontologies developed by various plant breeding and research communities from around the world. We provide integrated data on plant traits, phenotypes, and gene function and expression from 95 plant taxa, annotated with reference ontology terms. The Planteome project is developing a plant gene annotation platform; Planteome Noctua, to facilitate community engagement. All the Planteome ontologies are publicly available and are maintained at the Planteome GitHub site (https://github.com/Planteome) for sharing, tracking revisions and new requests. The annotated data are freely accessible from the ontology browser (http://browser.planteome.org/amigo) and our data repository

AB - The Planteome project (http://www.planteome.org) provides a suite of reference and species-specific ontologies for plants and annotations to genes and phenotypes. Ontologies serve as common standards for semantic integration of a large and growing corpus of plant genomics, phenomics and genetics data. The reference ontologies include the Plant Ontology, Plant Trait Ontology and the Plant Experimental Conditions Ontology developed by the Planteome project, along with the Gene Ontology, Chemical Entities of Biological Interest, Phenotype and Attribute Ontology, and others. The project also provides access to species-specific Crop Ontologies developed by various plant breeding and research communities from around the world. We provide integrated data on plant traits, phenotypes, and gene function and expression from 95 plant taxa, annotated with reference ontology terms. The Planteome project is developing a plant gene annotation platform; Planteome Noctua, to facilitate community engagement. All the Planteome ontologies are publicly available and are maintained at the Planteome GitHub site (https://github.com/Planteome) for sharing, tracking revisions and new requests. The annotated data are freely accessible from the ontology browser (http://browser.planteome.org/amigo) and our data repository

U2 - 10.1093/nar/gkx1152

DO - 10.1093/nar/gkx1152

M3 - Article

JO - Nucleic Acids Research

JF - Nucleic Acids Research

SN - 0305-1048

M1 - gkx1152

ER -

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