The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.

Standard

The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics. / Jones, Andrew R.; Miller, Michael; Aebersold, Ruedi; Apweiler, Rolf; Ball, Catherine A.; Brazma, Alvis; DeGreef, James; Hardy, Nigel; Hermjakob, Henning; Hubbard, Simon J.; Hussey, Peter; Igra, Mark; Jenkins, Helen; Julian Jr, Randall K.; Laursen, Kent; Oliver, Stephen G.; Paton, Norman W.; Sansone, Susanna-Assunta; Sarkans, Ugis; Stoeckert Jr, Christian J.; Taylor, Chris F.; Whetzel, Patricia L.; White, Joseph A.; Spellman, Paul; Pizarro, Angel.

In: Nature Biotechnology, Vol. 25, 05.10.2007, p. 1127-1133.

Research output: Contribution to journalArticlepeer-review

Harvard

Jones, AR, Miller, M, Aebersold, R, Apweiler, R, Ball, CA, Brazma, A, DeGreef, J, Hardy, N, Hermjakob, H, Hubbard, SJ, Hussey, P, Igra, M, Jenkins, H, Julian Jr, RK, Laursen, K, Oliver, SG, Paton, NW, Sansone, S-A, Sarkans, U, Stoeckert Jr, CJ, Taylor, CF, Whetzel, PL, White, JA, Spellman, P & Pizarro, A 2007, 'The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.', Nature Biotechnology, vol. 25, pp. 1127-1133. https://doi.org/10.1038/nbt1347

APA

Jones, A. R., Miller, M., Aebersold, R., Apweiler, R., Ball, C. A., Brazma, A., DeGreef, J., Hardy, N., Hermjakob, H., Hubbard, S. J., Hussey, P., Igra, M., Jenkins, H., Julian Jr, R. K., Laursen, K., Oliver, S. G., Paton, N. W., Sansone, S-A., Sarkans, U., ... Pizarro, A. (2007). The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics. Nature Biotechnology, 25, 1127-1133. https://doi.org/10.1038/nbt1347

Vancouver

Jones AR, Miller M, Aebersold R, Apweiler R, Ball CA, Brazma A et al. The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics. Nature Biotechnology. 2007 Oct 5;25:1127-1133. https://doi.org/10.1038/nbt1347

Author

Jones, Andrew R. ; Miller, Michael ; Aebersold, Ruedi ; Apweiler, Rolf ; Ball, Catherine A. ; Brazma, Alvis ; DeGreef, James ; Hardy, Nigel ; Hermjakob, Henning ; Hubbard, Simon J. ; Hussey, Peter ; Igra, Mark ; Jenkins, Helen ; Julian Jr, Randall K. ; Laursen, Kent ; Oliver, Stephen G. ; Paton, Norman W. ; Sansone, Susanna-Assunta ; Sarkans, Ugis ; Stoeckert Jr, Christian J. ; Taylor, Chris F. ; Whetzel, Patricia L. ; White, Joseph A. ; Spellman, Paul ; Pizarro, Angel. / The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics. In: Nature Biotechnology. 2007 ; Vol. 25. pp. 1127-1133.

Bibtex - Download

@article{44070ec302d543c68afc04abee1a784f,
title = "The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.",
abstract = "The Functional Genomics Experiment data model (FuGE) has been developed to facilitate convergence of data standards for high-throughput, comprehensive analyses in biology. FuGE models the components of an experimental activity that are common across different technologies, including protocols, samples and data. FuGE provides a foundation for describing entire laboratory workflows and for the development of new data formats. The Microarray Gene Expression Data society and the Proteomics Standards Initiative have committed to using FuGE as the basis for defining their respective standards, and other standards groups, including the Metabolomics Standards Initiative, are evaluating FuGE in their development efforts. Adoption of FuGE by multiple standards bodies will enable uniform reporting of common parts of functional genomics workflows, simplify data-integration efforts and ease the burden on researchers seeking to fulfill multiple minimum reporting requirements. Such advances are important for transparent data management and mining in functional genomics and systems biology.",
author = "Jones, {Andrew R.} and Michael Miller and Ruedi Aebersold and Rolf Apweiler and Ball, {Catherine A.} and Alvis Brazma and James DeGreef and Nigel Hardy and Henning Hermjakob and Hubbard, {Simon J.} and Peter Hussey and Mark Igra and Helen Jenkins and {Julian Jr}, {Randall K.} and Kent Laursen and Oliver, {Stephen G.} and Paton, {Norman W.} and Susanna-Assunta Sansone and Ugis Sarkans and {Stoeckert Jr}, {Christian J.} and Taylor, {Chris F.} and Whetzel, {Patricia L.} and White, {Joseph A.} and Paul Spellman and Angel Pizarro",
note = "Jones, A. R., Miller, M., Aebersold, R., Apweiler, R., Ball, C. A., Brazma, A., DeGreef, J., Hardy, N., Hermjakob, H., Hubbard, S. J., Hussey, P., Igra, M., Jenkins, H., Julian Jr, R. K., Laursen, K., Oliver, S. G., Paton, N. W., Sansone, S-A., Sarkans, U., Stoeckert Jr, C. J., Taylor, C. F., Whetzel, P. L., White, J. A., Spellman, P., Pizarro, A. (2007). The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.Nature Biotechnology, 25, 1127-1133",
year = "2007",
month = oct,
day = "5",
doi = "10.1038/nbt1347",
language = "English",
volume = "25",
pages = "1127--1133",
journal = "Nature Biotechnology",
issn = "1087-0156",
publisher = "Springer Nature",

}

RIS (suitable for import to EndNote) - Download

TY - JOUR

T1 - The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.

AU - Jones, Andrew R.

AU - Miller, Michael

AU - Aebersold, Ruedi

AU - Apweiler, Rolf

AU - Ball, Catherine A.

AU - Brazma, Alvis

AU - DeGreef, James

AU - Hardy, Nigel

AU - Hermjakob, Henning

AU - Hubbard, Simon J.

AU - Hussey, Peter

AU - Igra, Mark

AU - Jenkins, Helen

AU - Julian Jr, Randall K.

AU - Laursen, Kent

AU - Oliver, Stephen G.

AU - Paton, Norman W.

AU - Sansone, Susanna-Assunta

AU - Sarkans, Ugis

AU - Stoeckert Jr, Christian J.

AU - Taylor, Chris F.

AU - Whetzel, Patricia L.

AU - White, Joseph A.

AU - Spellman, Paul

AU - Pizarro, Angel

N1 - Jones, A. R., Miller, M., Aebersold, R., Apweiler, R., Ball, C. A., Brazma, A., DeGreef, J., Hardy, N., Hermjakob, H., Hubbard, S. J., Hussey, P., Igra, M., Jenkins, H., Julian Jr, R. K., Laursen, K., Oliver, S. G., Paton, N. W., Sansone, S-A., Sarkans, U., Stoeckert Jr, C. J., Taylor, C. F., Whetzel, P. L., White, J. A., Spellman, P., Pizarro, A. (2007). The Functional Genomics Experiment model (FuGE): an extensible framework for standards in functional genomics.Nature Biotechnology, 25, 1127-1133

PY - 2007/10/5

Y1 - 2007/10/5

N2 - The Functional Genomics Experiment data model (FuGE) has been developed to facilitate convergence of data standards for high-throughput, comprehensive analyses in biology. FuGE models the components of an experimental activity that are common across different technologies, including protocols, samples and data. FuGE provides a foundation for describing entire laboratory workflows and for the development of new data formats. The Microarray Gene Expression Data society and the Proteomics Standards Initiative have committed to using FuGE as the basis for defining their respective standards, and other standards groups, including the Metabolomics Standards Initiative, are evaluating FuGE in their development efforts. Adoption of FuGE by multiple standards bodies will enable uniform reporting of common parts of functional genomics workflows, simplify data-integration efforts and ease the burden on researchers seeking to fulfill multiple minimum reporting requirements. Such advances are important for transparent data management and mining in functional genomics and systems biology.

AB - The Functional Genomics Experiment data model (FuGE) has been developed to facilitate convergence of data standards for high-throughput, comprehensive analyses in biology. FuGE models the components of an experimental activity that are common across different technologies, including protocols, samples and data. FuGE provides a foundation for describing entire laboratory workflows and for the development of new data formats. The Microarray Gene Expression Data society and the Proteomics Standards Initiative have committed to using FuGE as the basis for defining their respective standards, and other standards groups, including the Metabolomics Standards Initiative, are evaluating FuGE in their development efforts. Adoption of FuGE by multiple standards bodies will enable uniform reporting of common parts of functional genomics workflows, simplify data-integration efforts and ease the burden on researchers seeking to fulfill multiple minimum reporting requirements. Such advances are important for transparent data management and mining in functional genomics and systems biology.

U2 - 10.1038/nbt1347

DO - 10.1038/nbt1347

M3 - Article

C2 - 17921998

VL - 25

SP - 1127

EP - 1133

JO - Nature Biotechnology

JF - Nature Biotechnology

SN - 1087-0156

ER -

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