Proposed minimum reporting standards for chemical analysis

Lloyd W. Sumner; Alexander Amberg; Dave Barrett; Michael H. Beale; Richard Beger; Clare Daykin; Teresa Fan; Oliver Fiehn; Royston Goodacre; Julian L. Griffin; Thomas Hankemeier; Nigel Hardy; James Harnly; Richard Higashi; Joachim Kopka; Andrew N. Lane; John C. Lindon; Philip Marriott; Andrew W. Nicholls; Michael D. Reily; John J. Thaden; Mark R. Viant

doi:10.1007/s11306-007-0082-2

Proposed minimum reporting standards for chemical analysis

Overview

Standard

Proposed minimum reporting standards for chemical analysis. / Sumner, Lloyd W.; Amberg, Alexander; Barrett, Dave; Beale, Michael H.; Beger, Richard; Daykin, Clare; Fan, Teresa; Fiehn, Oliver; Goodacre, Royston; Griffin, Julian L.; Hankemeier, Thomas; Hardy, Nigel; Harnly, James; Higashi, Richard; Kopka, Joachim; Lane, Andrew N.; Lindon, John C.; Marriott, Philip; Nicholls, Andrew W.; Reily, Michael D.; Thaden, John J.; Viant, Mark R.

In: Metabolomics, Vol. 3, No. 3, 01.09.2007, p. 211-221.

Research output: Contribution to journal › Article › peer-review

Harvard

Sumner, LW, Amberg, A, Barrett, D, Beale, MH, Beger, R, Daykin, C, Fan, T, Fiehn, O, Goodacre, R, Griffin, JL, Hankemeier, T, Hardy, N, Harnly, J, Higashi, R, Kopka, J, Lane, AN, Lindon, JC, Marriott, P, Nicholls, AW, Reily, MD, Thaden, JJ & Viant, MR 2007, 'Proposed minimum reporting standards for chemical analysis', Metabolomics, vol. 3, no. 3, pp. 211-221. https://doi.org/10.1007/s11306-007-0082-2

APA

Sumner, L. W., Amberg, A., Barrett, D., Beale, M. H., Beger, R., Daykin, C., Fan, T., Fiehn, O., Goodacre, R., Griffin, J. L., Hankemeier, T., Hardy, N., Harnly, J., Higashi, R., Kopka, J., Lane, A. N., Lindon, J. C., Marriott, P., Nicholls, A. W., ... Viant, M. R. (2007). Proposed minimum reporting standards for chemical analysis. Metabolomics, 3(3), 211-221. https://doi.org/10.1007/s11306-007-0082-2

Vancouver

Sumner LW, Amberg A, Barrett D, Beale MH, Beger R, Daykin C et al. Proposed minimum reporting standards for chemical analysis. Metabolomics. 2007 Sep 1;3(3):211-221. https://doi.org/10.1007/s11306-007-0082-2

Author

Sumner, Lloyd W. ; Amberg, Alexander ; Barrett, Dave ; Beale, Michael H. ; Beger, Richard ; Daykin, Clare ; Fan, Teresa ; Fiehn, Oliver ; Goodacre, Royston ; Griffin, Julian L. ; Hankemeier, Thomas ; Hardy, Nigel ; Harnly, James ; Higashi, Richard ; Kopka, Joachim ; Lane, Andrew N. ; Lindon, John C. ; Marriott, Philip ; Nicholls, Andrew W. ; Reily, Michael D. ; Thaden, John J. ; Viant, Mark R. / Proposed minimum reporting standards for chemical analysis. In: Metabolomics. 2007 ; Vol. 3, No. 3. pp. 211-221.

Bibtex - Download

@article{f4e69d1f6f414def83e440d2a842ba85,

title = "Proposed minimum reporting standards for chemical analysis",

abstract = "There is a general consensus that supports the need for standardized reporting of metadata or information describing large-scale metabolomics and other functional genomics data sets. Reporting of standard metadata provides a biological and empirical context for the data, facilitates experimental replication, and enables the re-interrogation and comparison of data by others. Accordingly, the Metabolomics Standards Initiative is building a general consensus concerning the minimum reporting standards for metabolomics experiments of which the Chemical Analysis Working Group (CAWG) is a member of this community effort. This article proposes the minimum reporting standards related to the chemical analysis aspects of metabolomics experiments including: sample preparation, experimental analysis, quality control, metabolite identification, and data pre-processing. These minimum standards currently focus mostly upon mass spectrometry and nuclear magnetic resonance spectroscopy due to the popularity of these techniques in metabolomics. However, additional input concerning other techniques is welcomed and can be provided via the CAWG on-line discussion forum at http://msi-workgroups.sourceforge.net/ or http://Msi-workgroups-feedback@lists.sourceforge.net. Further, community input related to this document can also be provided via this electronic forum.",

keywords = "metabolomics, metabolite profiling, metabolite identification, minimum reporting standards, chemical analysis, mass spectrometry, nuclear magnetic resonance, flux, isotopomer analysis, GC-MS, LC-MS, CE-MS, NMR, quality control, method validation",

author = "Sumner, {Lloyd W.} and Alexander Amberg and Dave Barrett and Beale, {Michael H.} and Richard Beger and Clare Daykin and Teresa Fan and Oliver Fiehn and Royston Goodacre and Griffin, {Julian L.} and Thomas Hankemeier and Nigel Hardy and James Harnly and Richard Higashi and Joachim Kopka and Lane, {Andrew N.} and Lindon, {John C.} and Philip Marriott and Nicholls, {Andrew W.} and Reily, {Michael D.} and Thaden, {John J.} and Viant, {Mark R.}",

note = "Sumner, L. W., Amberg, A., Barrett, D., Beale, M. H., Beger, R., Daykin, C., Fan, T., Fiehn, O., Goodacre, R., Griffin, J. L., Hankemeier, T., Hardy, N., Harnly, J., Higashi, R., Kopka, J., Lane, A. N., Lindon, J. C., Marriott, P., Nicholls, A. W., Reily, M. D., Thaden, J. J., Viant, M. R. (2007). Proposed minimum reporting standards for chemical analysis. Metabolomics, 3 (3), 211-221",

year = "2007",

month = sep,

day = "1",

doi = "10.1007/s11306-007-0082-2",

language = "English",

volume = "3",

pages = "211--221",

journal = "Metabolomics",

issn = "1573-3882",

publisher = "Springer Nature",

number = "3",

}

RIS (suitable for import to EndNote) - Download

TY - JOUR

T1 - Proposed minimum reporting standards for chemical analysis

AU - Sumner, Lloyd W.

AU - Amberg, Alexander

AU - Barrett, Dave

AU - Beale, Michael H.

AU - Beger, Richard

AU - Daykin, Clare

AU - Fan, Teresa

AU - Fiehn, Oliver

AU - Goodacre, Royston

AU - Griffin, Julian L.

AU - Hankemeier, Thomas

AU - Hardy, Nigel

AU - Harnly, James

AU - Higashi, Richard

AU - Kopka, Joachim

AU - Lane, Andrew N.

AU - Lindon, John C.

AU - Marriott, Philip

AU - Nicholls, Andrew W.

AU - Reily, Michael D.

AU - Thaden, John J.

AU - Viant, Mark R.

N1 - Sumner, L. W., Amberg, A., Barrett, D., Beale, M. H., Beger, R., Daykin, C., Fan, T., Fiehn, O., Goodacre, R., Griffin, J. L., Hankemeier, T., Hardy, N., Harnly, J., Higashi, R., Kopka, J., Lane, A. N., Lindon, J. C., Marriott, P., Nicholls, A. W., Reily, M. D., Thaden, J. J., Viant, M. R. (2007). Proposed minimum reporting standards for chemical analysis. Metabolomics, 3 (3), 211-221

PY - 2007/9/1

Y1 - 2007/9/1

N2 - There is a general consensus that supports the need for standardized reporting of metadata or information describing large-scale metabolomics and other functional genomics data sets. Reporting of standard metadata provides a biological and empirical context for the data, facilitates experimental replication, and enables the re-interrogation and comparison of data by others. Accordingly, the Metabolomics Standards Initiative is building a general consensus concerning the minimum reporting standards for metabolomics experiments of which the Chemical Analysis Working Group (CAWG) is a member of this community effort. This article proposes the minimum reporting standards related to the chemical analysis aspects of metabolomics experiments including: sample preparation, experimental analysis, quality control, metabolite identification, and data pre-processing. These minimum standards currently focus mostly upon mass spectrometry and nuclear magnetic resonance spectroscopy due to the popularity of these techniques in metabolomics. However, additional input concerning other techniques is welcomed and can be provided via the CAWG on-line discussion forum at http://msi-workgroups.sourceforge.net/ or http://Msi-workgroups-feedback@lists.sourceforge.net. Further, community input related to this document can also be provided via this electronic forum.

AB - There is a general consensus that supports the need for standardized reporting of metadata or information describing large-scale metabolomics and other functional genomics data sets. Reporting of standard metadata provides a biological and empirical context for the data, facilitates experimental replication, and enables the re-interrogation and comparison of data by others. Accordingly, the Metabolomics Standards Initiative is building a general consensus concerning the minimum reporting standards for metabolomics experiments of which the Chemical Analysis Working Group (CAWG) is a member of this community effort. This article proposes the minimum reporting standards related to the chemical analysis aspects of metabolomics experiments including: sample preparation, experimental analysis, quality control, metabolite identification, and data pre-processing. These minimum standards currently focus mostly upon mass spectrometry and nuclear magnetic resonance spectroscopy due to the popularity of these techniques in metabolomics. However, additional input concerning other techniques is welcomed and can be provided via the CAWG on-line discussion forum at http://msi-workgroups.sourceforge.net/ or http://Msi-workgroups-feedback@lists.sourceforge.net. Further, community input related to this document can also be provided via this electronic forum.

KW - metabolomics

KW - metabolite profiling

KW - metabolite identification

KW - minimum reporting standards

KW - chemical analysis

KW - mass spectrometry

KW - nuclear magnetic resonance

KW - flux

KW - isotopomer analysis

KW - GC-MS

KW - LC-MS

KW - CE-MS