A proposed framework for the description of plant metabolomics experiments and their results

Standard

A proposed framework for the description of plant metabolomics experiments and their results. / Jenkins, Helen Ann; Hardy, Nigel William; Beckmann, Manfred et al.

In: Nature Biotechnology, Vol. 22, No. 12, 06.12.2004, p. 1601-1606.

Research output: Contribution to journal › Article › peer-review

Harvard

Jenkins, HA, Hardy, NW, Beckmann, M, Draper, J, Smith, AR, Taylor, J, Fiehn, O, Goodacre, R, Bino, RJ, Hall, RD, Kopka, J, Lane, GA, Lange, M, Liu, JR, Mendes, P, Nikolau, BJ, Oliver, SG, Paton, NW, Rhee, S, Roessner-Tunali, U, Saito, K, Smedsgaard, J, Sumner, LW, Wang, T, Walsh, S, Wurtele, ES & Kell, DB 2004, 'A proposed framework for the description of plant metabolomics experiments and their results', Nature Biotechnology, vol. 22, no. 12, pp. 1601-1606. https://doi.org/10.1038/nbt1041

APA

Jenkins, H. A., Hardy, N. W., Beckmann, M., Draper, J., Smith, A. R., Taylor, J., Fiehn, O., Goodacre, R., Bino, R. J., Hall, R. D., Kopka, J., Lane, G. A., Lange, M., Liu, J. R., Mendes, P., Nikolau, B. J., Oliver, S. G., Paton, N. W., Rhee, S., ... Kell, D. B. (2004). A proposed framework for the description of plant metabolomics experiments and their results. Nature Biotechnology, 22(12), 1601-1606. https://doi.org/10.1038/nbt1041

Vancouver

Jenkins HA, Hardy NW, Beckmann M, Draper J, Smith AR, Taylor J et al. A proposed framework for the description of plant metabolomics experiments and their results. Nature Biotechnology. 2004 Dec 6;22(12):1601-1606. doi: 10.1038/nbt1041

Author

Jenkins, Helen Ann ; Hardy, Nigel William ; Beckmann, Manfred et al. / A proposed framework for the description of plant metabolomics experiments and their results. In: Nature Biotechnology. 2004 ; Vol. 22, No. 12. pp. 1601-1606.

Bibtex - Download

@article{82e677cbd58840c786d294f145346620,
title = "A proposed framework for the description of plant metabolomics experiments and their results",
abstract = "The study of the metabolite complement of biological samples, known as metabolomics, is creating large amounts of data, and support for handling these data sets is required to facilitate meaningful analyses that will answer biological questions. We present a data model for plant metabolomics known as ArMet (architecture for metabolomics). It encompasses the entire experimental time line from experiment definition and description of biological source material, through sample growth and preparation to the results of chemical analysis. Such formal data descriptions, which specify the full experimental context, enable principled comparison of data sets, allow proper interpretation of experimental results, permit the repetition of experiments and provide a basis for the design of systems for data storage and transmission. The current design and example implementations are freely available (http://www.armet.org/). We seek to advance discussion and community adoption of a standard for metabolomics, which would promote principled collection, storage and transmission of experiment data.",
author = "Jenkins, {Helen Ann} and Hardy, {Nigel William} and Manfred Beckmann and John Draper and Smith, {Aileen Roberta} and Janet Taylor and Oliver Fiehn and Royston Goodacre and Bino, {Raoul J.} and Hall, {Robert D.} and Joachim Kopka and Lane, {Geoffrey A} and Markus Lange and Liu, {Jang R} and Pedro Mendes and Nikolau, {Basil J} and Oliver, {Stephen G.} and Paton, {Norman W.} and Sue Rhee and Ute Roessner-Tunali and Kazuki Saito and J{\o}rn Smedsgaard and Sumner, {Lloyd W.} and Trevor Wang and Sean Walsh and Wurtele, {Eve Syrkin} and Kell, {Douglas B.}",
note = "Jenkins, H., Hardy, N., Beckmann, M., Draper, J., Smith, A. R., Taylor, J., Fiehn, O., Goodacre, R., Bino, R. J., Hall, R., Kopka, J., Lane, G. A., Lange, B. M., Liu, J. R., Mendes, P., Nikolau, B. J., Oliver, S. G., Paton, N. W., Rhee, S., Roessner-Tunali, U., Saito, K., Smedsgaard, J., Sumner, L. W., Wang, T., Walsh, S., Wurtele, E. S., Kell, D. B. (2004). A proposed framework for the description of plant metabolomics experiments and their results.  Nature Biotechnology, 22 (12), 1601-1606 Sponsorship: United Kingdom Food Standards Agency (under the G02006 project), the United Kingdom Biotechnology and Biological Sciences Research Council (particularly under the HiMet project) and the United Kingdom Engineering and Physical Sciences Research Council for support of their work in metabolomics.",
year = "2004",
month = dec,
day = "6",
doi = "10.1038/nbt1041",
language = "English",
volume = "22",
pages = "1601--1606",
journal = "Nature Biotechnology",
issn = "1087-0156",
publisher = "Springer Nature",
number = "12",

}

RIS (suitable for import to EndNote) - Download

TY - JOUR

T1 - A proposed framework for the description of plant metabolomics experiments and their results

AU - Jenkins, Helen Ann

AU - Hardy, Nigel William

AU - Beckmann, Manfred

AU - Draper, John

AU - Smith, Aileen Roberta

AU - Taylor, Janet

AU - Fiehn, Oliver

AU - Goodacre, Royston

AU - Bino, Raoul J.

AU - Hall, Robert D.

AU - Kopka, Joachim

AU - Lane, Geoffrey A

AU - Lange, Markus

AU - Liu, Jang R

AU - Mendes, Pedro

AU - Nikolau, Basil J

AU - Oliver, Stephen G.

AU - Paton, Norman W.

AU - Rhee, Sue

AU - Roessner-Tunali, Ute

AU - Saito, Kazuki

AU - Smedsgaard, Jørn

AU - Sumner, Lloyd W.

AU - Wang, Trevor

AU - Walsh, Sean

AU - Wurtele, Eve Syrkin

AU - Kell, Douglas B.

N1 - Jenkins, H., Hardy, N., Beckmann, M., Draper, J., Smith, A. R., Taylor, J., Fiehn, O., Goodacre, R., Bino, R. J., Hall, R., Kopka, J., Lane, G. A., Lange, B. M., Liu, J. R., Mendes, P., Nikolau, B. J., Oliver, S. G., Paton, N. W., Rhee, S., Roessner-Tunali, U., Saito, K., Smedsgaard, J., Sumner, L. W., Wang, T., Walsh, S., Wurtele, E. S., Kell, D. B. (2004). A proposed framework for the description of plant metabolomics experiments and their results.  Nature Biotechnology, 22 (12), 1601-1606 Sponsorship: United Kingdom Food Standards Agency (under the G02006 project), the United Kingdom Biotechnology and Biological Sciences Research Council (particularly under the HiMet project) and the United Kingdom Engineering and Physical Sciences Research Council for support of their work in metabolomics.

PY - 2004/12/6

Y1 - 2004/12/6

N2 - The study of the metabolite complement of biological samples, known as metabolomics, is creating large amounts of data, and support for handling these data sets is required to facilitate meaningful analyses that will answer biological questions. We present a data model for plant metabolomics known as ArMet (architecture for metabolomics). It encompasses the entire experimental time line from experiment definition and description of biological source material, through sample growth and preparation to the results of chemical analysis. Such formal data descriptions, which specify the full experimental context, enable principled comparison of data sets, allow proper interpretation of experimental results, permit the repetition of experiments and provide a basis for the design of systems for data storage and transmission. The current design and example implementations are freely available (http://www.armet.org/). We seek to advance discussion and community adoption of a standard for metabolomics, which would promote principled collection, storage and transmission of experiment data.

AB - The study of the metabolite complement of biological samples, known as metabolomics, is creating large amounts of data, and support for handling these data sets is required to facilitate meaningful analyses that will answer biological questions. We present a data model for plant metabolomics known as ArMet (architecture for metabolomics). It encompasses the entire experimental time line from experiment definition and description of biological source material, through sample growth and preparation to the results of chemical analysis. Such formal data descriptions, which specify the full experimental context, enable principled comparison of data sets, allow proper interpretation of experimental results, permit the repetition of experiments and provide a basis for the design of systems for data storage and transmission. The current design and example implementations are freely available (http://www.armet.org/). We seek to advance discussion and community adoption of a standard for metabolomics, which would promote principled collection, storage and transmission of experiment data.

U2 - 10.1038/nbt1041

DO - 10.1038/nbt1041

M3 - Article

C2 - 15583675

VL - 22

SP - 1601

EP - 1606

JO - Nature Biotechnology

JF - Nature Biotechnology

SN - 1087-0156

IS - 12

ER -

View graph of relations
Citation formats