Bioinformatics and genomic and phenomic platform development

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  1. 2021
  2. Published

    A deep learning-integrated micro-CT image analysis pipeline for quantifying rice lodging resistance-related traits

    Wu, D., Wu, D., Feng, H., Duan, L., Dai, G., Liu, X., Wang, K., Yang, P., Chen, G., Gay, A., Doonan, J., Niu, Z., Xiong, L. & Yang, W., 08 Mar 2021, In: Plant Communications. 2, 2, 100165.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1016/j.xplc.2021.100165
  3. 2020
  4. Published

    Semi-Automated Field Plot Segmentation From UAS Imagery for Experimental Agriculture

    Robb, C., Hardy, A., Doonan, J. & Brook, J., 09 Dec 2020, In: Frontiers in Plant Science. 11, 13 p., 591886.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.3389/fpls.2020.591886
  5. Published

    Drought priming effects on alleviating the photosynthetic limitations of wheat cultivars (Triticum aestivum L.) with contrasting tolerance to abiotic stresses

    Mendanha, T., Rosenqvist, E., Nordentoft Hyldgaard, B., Doonan, J. & Ottosen, C. O., 27 Nov 2020, In: Journal of Agronomy and Crop Science. 206, 6, p. 651-664 14 p.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1111/jac.12404
  6. Published

    High-Throughput Genome-Wide Genotyping To Optimize the Use of Natural Genetic Resources in the Grassland Species Perennial Ryegrass (Lolium perenne L.)

    Keep, T., Sampoux, J. P., Blanco-Pastor, J. L., Dehmer, K. J., Hegarty, M., Ledauphin, T., Litrico, I., Muylle, H., Roldán-Ruiz, I., Roschanski, A. M., Ruttink, T., Surault, F., Willner, E. & Barre, P., 01 Sept 2020, In: G3 (Bethesda, Md.). 10, 9, p. 3347-3364 18 p.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1534/g3.120.401491
  7. Published

    Gradual polyploid genome evolution revealed by pan-genomic analysis of Brachypodium hybridum and its diploid progenitors

    Gordon, S. P., Contreras-Moreira, B., Levy, J. J., Djamei, A., Czedik-Eysenberg, A., Tartaglio, V. S., Session, A., Martin, J., Cartwright, A., Katz, A., Singan, V. R., Goltsman, E., Barry, K., Dinh-Thi, V. H., Chalhoub, B., Diaz-Perez, A., Sancho, R., Lusinska, J., Wolny, E., Nibau, C., & 13 othersDoonan, J., Mur, L., Plott, C., Jenkins, J., Hazen, S. P., Lee, S. J., Shu, S., Goodstein, D., Rokhsar, D., Schmutz, J., Hasterok, R., Catalan, P. & Vogel, J. P., 29 Jul 2020, In: Nature Communications. 11, 1, 16 p., 3670.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1038/s41467-020-17302-5
  8. Published

    Genotypic variations in leaf and whole-plant water use efficiencies are closely related in bread wheat genotypes under well-watered and water-limited conditions during grain filling

    del Pozo, A., Méndez-Espinoza, A. M., Romero-Bravo, S., Garriga, M., Estrada, F., Alcaíno, M., Camargo-Rodriguez, A. V., Corke, F., Doonan, J. & Lobos, G. A., 16 Jan 2020, In: Scientific Reports. 10, 1, 460.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1038/s41598-019-57116-0
  9. 2019
  10. Published

    Water-Saving Traits Can Protect Wheat Grain Number Under Progressive Soil Drying at the Meiotic Stage: A Phenotyping Approach

    Faralli, M., Williams, K., Han, J., Corke, F., Doonan, J. & Kettlewell, P. S., 01 Dec 2019, In: Journal of Plant Growth Regulation. 38, 4, p. 1562-1573 12 p.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1007/s00344-019-09956-3
  11. Published

    Genomic insights from the first chromosome-scale assemblies of oat (Avena spp.) diploid species

    Maughan, P. J., Lee, R., Walstead, R., Vickerstaff, R. J., Fogarty, M. C., Brouwer, C. R., Reid, R. R., Jay, J. J., Bekele, W. A., Jackson, E. W., Tinker, N. A., Langdon, T., Schlueter, J. A. & Jellen, E. N., 22 Nov 2019, In: BMC Biology. 17, 1, 92.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1186/s12915-019-0712-y
  12. Published

    Differential gene expression and gene ontologies associated with increasing water-stress in leaf and root transcriptomes of perennial ryegrass (Lolium perenne)

    Fradera-Sola, A., Thomas, A., Gasior, D., Harper, J., Hegarty, M., Armstead, I. & Fernandez Fuentes, N., 30 Jul 2019, In: PLoS One. 14, 7, e0220518.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1371/journal.pone.0220518
  13. Published

    A comparative assessment of the performance of a stay-green sorghum (Sorghum bicolor (L) Moench) introgression line developed by marker-assisted selection and its parental lines

    Galyuon, I. K., Gay, A., Hash, C. T., Bidinger, F. R. & Howarth, C., 26 Jun 2019, In: African Journal of Biotechnology. 18, 26, p. 548-563 16 p., 7118D0361330.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.5897/AJB2019.16826
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