Prof John Draper B.Sc. and Ph.D.

Chair

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ChairDepartment of Life Sciences - Teaching And Research

University website profile

Department of Life Sciences

Postal address

Aberystwyth University
Edward Llwyd Building
Penglais
Aberystwyth

United Kingdom of Great Britain and Northern Ireland

Contact

jhd@aber.ac.uk

Phone: 01970 622789

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2022
Published
Spectral binning as an approach to post-acquisition processing of high resolution FIE-MS metabolome fingerprinting data
Finch, J., Wilson, T., Lyons, L., Phillips, H., Beckmann, M. & Draper, J., 02 Aug 2022, In: Metabolomics. 18, 8, 9 p., 64.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1007/s11306-022-01923-6
Published
Assessing Adherence to Healthy Dietary Habits Through the Urinary Food Metabolome: Results From a European Two-Center Study
Castellano-Escuder, P., González-Domínguez, R., Vaillant, M. F., Casas-Agustench, P., Hidalgo-Liberona, N., Estanyol-Torres, N., Wilson, T., Beckmann, M., Lloyd, A., Oberli, M., Moinard, C., Pison, C., Borel, J. C., Joyeux-Faure, M., Sicard, M., Artemova, S., Terrisse, H., Dancer, P., Draper, J., Sánchez-Pla, A., & 1 othersAndres-Lacueva, C., 09 Jun 2022, In: Frontiers in Nutrition. 9, 11 p., 880770.
Research output: Contribution to journal › Article › peer-review
DOI: 10.3389/fnut.2022.880770
2021
Published
Nutrition and frailty: Opportunities for prevention and treatment
Ni Lochlainn, M., Cox, N. J., Wilson, T., Hayhoe, R. P. G., Ramsay, S. E., Granic, A., Isanejad, M., Roberts, H. C., Wilson, D., Welch, C., Hurst, C., Atkins, J. L., Mendonça, N., Horner, K., Tuttiett, E. R., Morgan, Y., Heslop, P., Williams, E. A., Steves, C. J., Greig, C., & 6 others Draper, J., Corish, C. A., Welch, A., Witham, M. D., Sayer, A. A. & Robinson, S., 09 Jul 2021, In: Nutrients. 13, 7, 20 p., 2349.
Research output: Contribution to journal › Review article › peer-review
DOI: 10.3390/nu13072349
Published
UK Nutrition Research Partnership (NRP) workshop: Forum on advancing dietary intake assessment
de la Hunty, A., Buttriss, J., Draper, J., Roche, H., Levey, G., Florescu, A., Penfold, N. & Frost, G., 04 Jun 2021, In: Nutrition Bulletin. 46, 2, p. 228-237 10 p.
Research output: Contribution to journal › Editorial
DOI: 10.1111/nbu.12501
Published
Index measures for oak decline severity using phenotypic descriptors
Finch, J., Brown, N., Beckmann, M., Denman, S. & Draper, J., 01 Apr 2021, In: Forest Ecology and Management. 485, 118948.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1016/j.foreco.2021.118948
Published
Application of Metabolomics for the Assessment of Process-induced Changes in Whole Grain Foods
Lloyd, A., Tailliart, K., Beckmann, M. & Draper, J., 01 Jan 2021, Whole Grains and Health: Second Edition. Landberg, R. (ed.). Wiley, p. 351-374 24 p.
Research output: Chapter in Book/Report/Conference proceeding › Chapter
DOI: 10.1002/9781118939420.ch18
2020
Published
Challenges Associated With the Design and Deployment of Food Intake Urine Biomarker Technology for Assessment of Habitual Diet in Free-Living Individuals and Populations: A Perspective
Beckmann, M., Wilson, T., Lloyd, A., Torres, D. P. M., Goios, A. C. L., Willis, N. D., Lyons, L., Phillips, H., Mathers, J. M. & Draper, J., 25 Nov 2020, In: Frontiers in Nutrition. 7, 19 p., 602515.
Research output: Contribution to journal › Article › peer-review
DOI: 10.3389/fnut.2020.602515
Published
Design and Characterisation of a Randomized Food Intervention That Mimics Exposure to a Typical UK Diet to Provide Urine Samples for Identification and Validation of Metabolite Biomarkers of Food Intake
Willis, N. D., Lloyd, A., Xie, L., Stiegler, M., Tailliart, K., Garcia-Perez, I., Chambers, E., Beckmann, M., Draper, J. & Mathers, J. C., 21 Oct 2020, In: Frontiers in Nutrition. 7, 16 p., 561010.
Research output: Contribution to journal › Article › peer-review
DOI: 10.3389/fnut.2020.561010
E-pub ahead of print
Calystegines are Potential Urine Biomarkers for Dietary Exposure to Potato Products
Beckmann, M., Lloyd, A., Wilson, T., Torres, D. P. M., Goios, A. C. L., Willis, N. D., Lyons, L., Phillips, H., Mathers, J. C., Nash, R. J., Sharp, H. & Draper, J., 29 Sep 2020, (E-pub ahead of print) In: Molecular Nutrition and Food Research. 64, 11 p., 2000515.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1002/mnfr.202000515
E-pub ahead of print
A Standardized Strategy for Simultaneous Quantification of Urine Metabolites to Validate Development of a Biomarker Panel Allowing Comprehensive Assessment of Dietary Exposure
Beckmann, M., Wilson, T., Zubair, H., Lloyd, A., Lyons, L., Phillips, H., Tailliart, K., Gregory, N., Thatcher, R., Garcia-Perez, I., Frost, G., Mathers, J. M. & Draper, J., 28 Sep 2020, (E-pub ahead of print) In: Molecular Nutrition and Food Research. 15 p., 2000517.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1002/mnfr.202000517
Published
Dietary metabotype modelling predicts individual responses to dietary interventions
Garcia-Perez, I., Posma, J. M., Chambers, E., Mathers, J. C., Draper, J., Beckmann, M., Nicholson, J. K., Holmes, E. & Frost, G., 17 Jun 2020, In: Nature Food. 1, p. 355–364 10 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1038/s43016-020-0092-z
Published
Developing community-based urine sampling methods to deploy biomarker technology for assessment of dietary exposure
Lloyd, A., Wilson, T., Willis, N. D., Lyons, L., Phillips, H., Janssen, H., Stiegler, M., Xie, L., Tailliart, K., Beckmann, M., Stevenson, L., Mathers, J. C. & Draper, J., 11 Jun 2020, In: Public Health Nutrition. 23, 17, p. 3081–3092
Research output: Contribution to journal › Article › peer-review
DOI: 10.1017/S136898002000097X
2019
Published
Perspective: Dietary Biomarkers of Intake and Exposure - Exploration with Omics Approaches
Maruvada, P., Lampe, J. W., Wishart, D. S., Barupal, D., Chester, D. N., Dodd, D., Djoumbou-Feunang, Y., Dorrestein, P. C., Dragsted, L. O., Draper, J., Duffy, L. C., Dwyer, J. T., Emenaker, N. J., Fiehn, O., Gerszten, R. E., Hu, F. B., Karp, R. W., Klurfeld, D. M., Laughlin, M. R., Little, A. R., & 16 othersLynch, C. J., Moore, S. C., Nicastro, H. L., O'Brien, D. M., Ordovás, J. M., Osganian, S. K., Playdon, M., Prentice, R., Raftery, D., Reisdorph, N., Roche, H. M., Ross, S. A., Sang, S., Scalbert, A., Srinivas, P. R. & Zeisel, S. H., 06 Aug 2019, In: Advances in Nutrition. nmz075.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1093/advances/nmz075
Published
Spot and Cumulative Urine Samples Are Suitable Replacements for 24-Hour Urine Collections for Objective Measure of Dietary Exposure in Adults Using Metabolite Biomarkers
Wilson, T., Garcia-Perez, I., Posma, J. M., Lloyd, A., Chambers, E. S., Tailliart, K., Zubair, H., Beckmann, M., Mathers, J. C., Holmes, E., Frost, G. & Draper, J., 26 Jun 2019, In: Journal of Nutrition. 149, 10, p. 1692-1700 9 p., nxz138.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1093/jn/nxz138
E-pub ahead of print
Developing a food exposure and urine sampling strategy for dietary exposure biomarker validation in free-living individuals
Lloyd, A., Willis, N. D., Wilson, T., Zubair, H., Xie, L., Chambers, E. S., Garcia-Perez, I., Tailliart, K., Beckmann, M., Mathers, J. C. & Draper, J., 03 Jun 2019, (E-pub ahead of print) In: Molecular Nutrition and Food Research. 1900062.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1002/mnfr.201900062
Published
Addressing the pitfalls when designing intervention studies to discover and validate biomarkers or habitual dietary intake
Lloyd, A., Willis, N. D., Wilson, T., Zubair, H., Chambers, E., Garcia-Perez, I., Xie, L., Tailliart, K., Beckmann, M., Mathers, J. C. & Draper, J., 02 May 2019, In: Metabolomics. 15, 5, 12 p., 72.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1007/s11306-019-1532-3
2017
Published
Use of biomarkers to assess fruit and vegetables intake
Woodside, J. V., Draper, J., Lloyd, A. & McKinley, M. C., 01 Aug 2017, In: Proceedings of the Nutrition Society. 76, 3, p. 308-315 8 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1017/S0029665117000325
Published
Objective assessment of dietary patterns by use of metabolic phenotyping: A randomised, controlled, crossover trial
Garcia-Perez, I., Posma, J. M., Gibson, R., Chambers, E. S., Hanson, T. H., Vestergaard, H., Hansen, T., Beckmann, M., Pedersen, O., Elliott, P., Stamler, J., Nicholson, J. K., Draper, J., Mathers, J. C., Holmes, E. & Frost, G., 31 Mar 2017, In: Lancet Diabetes and Endocrinology. 5, 3, p. 184-195 12 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1016/S2213-8587(16)30419-3
Published
Integrated Analytical and Statistical Two-Dimensional Spectroscopy Strategy for Metabolite Identification: Application to Dietary Biomarkers
Posma, J. M., Garcia-Perez, I., Heaton, J. C., Burdisso, P., Mathers, J. C., Draper, J., Lewis, M., Lindon, J. C., Frost, G., Holmes, E. & Nicholson, J. K., 21 Mar 2017, In: Analytical Chemistry. 89, 6, p. 3300-3309 10 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1021/acs.analchem.6b03324
Published
Diversity and association of phenotypic and metabolomic traits in the close model grasses Brachypodium distachyon, B. stacei and B. hybridum
López-Álvarez, D., Zubair, H., Beckmann, M., Draper, J. & Catalán, P., 01 Mar 2017, In: Annals of Botany. 119, 4, p. 545-561
Research output: Contribution to journal › Article › peer-review
DOI: 10.1093/aob/mcw239
Published
Ultra High Performance Liquid Chromatography-High Resolution Mass Spectrometry plasma lipidomics can distinguish between canine breeds despite uncontrolled environmental variability and non-standardized diets: Plasma lipidome of dog breeds using UHPLC-HRM
Lloyd, A., Beckmann, M., Wilson, T., Tailliart, K., Allaway, D. & Draper, J., 01 Feb 2017, In: Metabolomics. 13, 15.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1007/s11306-016-1152-0
2016
Published
Developing community-based urine sampling methods to facilitate dietary exposure biomarker technology for population assessment
Wilson, T., Willis, N. D., Zubair, H., Beckmann, M., Xie, L., Tailliart, K., Lloyd, A., Mathers, J. C. & Draper, J., 24 Nov 2016, In: Proceedings of the Nutrition Society. 75, OCE3, E240.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1017/S002966511600255X
Published
Quantification of dietary biomarkers in spot urine samples reflects the intake of foods of UK high public health importance
Lloyd, A., Zubair, H., Willis, N. D., Wilson, T., Xie, L., Tailliart, K., Chambers, E. S., Garcia-Perez, I., Holmes, E., Frost, G., Mathers, J. C., Beckmann, M. & Draper, J., 24 Nov 2016, In: Proceedings of the Nutrition Society. 75, OCE3, E248.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1017/S0029665116002639
Published
Characterisation of the main drivers of intra- and inter- breed variability in the plasma metabolome of dogs
Lloyd, A., Beckmann, M., Tailliart, K., Brown, W. Y., Draper, J. & Allaway, D., 01 Apr 2016, In: Metabolomics. 12, 4, 72.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1007/s11306-016-0997-6
Published
An Analytical Pipeline for Quantitative Characterization of Dietary Intake: Application To Assess Grape Intake
Garcia-Perez, I., Posma, J. M., Chambers, E. S., Nicholson, J. K., Mathers, J. C., Beckmann, M., Draper, J., Holmes, E. & Frost, G., 23 Mar 2016, In: Journal of Agricultural and Food Chemistry. 64, 11, p. 2423-2431 9 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1021/acs.jafc.5b05878
Published
Changes in the human plasma and urinary metabolome associated with acute dietary exposure to sucrose and the identification of potential biomarkers of sucrose intake
Beckmann, M., Joosen, A. M., Clarke, M. M., Mugridge, O., Frost, G., Engel, B., Tailliart, K., Lloyd, A., Draper, J. & Lodge, J. K., 01 Feb 2016, In: Molecular Nutrition and Food Research. 60, 2, p. 444-457
Research output: Contribution to journal › Article › peer-review
DOI: 10.1002/mnfr.201500495
Published
Improving Efficiency and Reducing Waste in the Beef Supply Chain
Scollan, N., MacKintosh, S., Richardson, R. I., Singh, A., Mishra, N. & Draper, J., 2016, p. 211.
Research output: Contribution to conference › Paper › peer-review
Published
Variation in the M. longissumus texture and cooking loss from cattle within a commercial supply chain.
MacKintosh, S., Draper, J., Scott, A., Leemans, D., Morgan, S., Powell, H., Richardson, R. I. & Scollan, N., 2016, p. 138.
Research output: Contribution to conference › Poster › peer-review
2015
Published
Dietary compliance in a human intervention study investigating the impact of specific foods on urinary metabolites
Willis, N. D., Dodds, S. E., Lloyd, A., Xie, L., Chambers, E. S., Garcia-Perez, I., Frost, G., Beckmann, M., Draper, J. & Mathers, J. C., 15 Apr 2015, In: Proceedings of the Nutrition Society. 74, OCE1, 1 p., E127.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1017/S0029665115001421
2014
Published
The food metabolome: A window over dietary exposure
Scalbert, A., Brennan, L., Manach, C., Andres-Lacueva, C., Dragsted, L. O., Draper, J., Rappaport, S. M., Van Der Hooft, J. J. J. & Wishart, D. S., 01 Jun 2014, In: American Journal of Clinical Nutrition. 99, 6, p. 1286-1308 23 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.3945/ajcn.113.076133
Published
Erratum to: Brachypodium distachyon: making hay with a wild grass: [Trends in Plant Science 13 (2008) 172–177]
Opanowicz, M., Vain, P., Draper, J., Parker, D. & Doonan, J., 01 Mar 2014, In: Trends in Plant Science. 19, 3, p. 193
Research output: Contribution to journal › Correction › peer-review
DOI: 10.1016/j.tplants.2014.01.012
2013
Published
Merits of random forests emerge in evaluation of chemometric classifiers by external validation
Scott, I., Lin, W., Liakata, M., Wood, J. E., Vermeer, C. P., Allaway, D., Ward, J. L., Draper, J., Beale, M. H., Corol, D. I., Baker, J. M. & King, R. D., 01 Nov 2013, In: Analytica Chimica Acta. 801, p. 22-33 12 p., ACA232839.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1016/j.aca.2013.09.027
Published
Hydroxylated phenylacetamides derived from bioactive benzoxazinoids are bioavailable in humans after habitual consumption of whole grain sourdough rye bread
Beckmann, M., Lloyd, A., Halder, S., Seal, C., Brandt, K. & Draper, J., Oct 2013, In: Molecular Nutrition and Food Research. 57, 10, p. 1859-1873 15 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1002/mnfr.201200777
Published
Dietary exposure biomarker-lead discovery based on Metabolomics analysis of urine samples
Beckmann, M., Lloyd, A., Halder, S., Fave, G., Seal, C., Brandt, K., Mathers, J. C. & Draper, J., Aug 2013, In: Proceedings of the Nutrition Society. 72, 3, p. 352-361 10 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1017/S0029665113001237
Published
Flow infusion electrospray ionisation mass spectrometry for high throughput, non-targeted metabolite fingerprinting: A Review
Draper, J., Lloyd, A., Goodacre, R. & Beckmann, M., Mar 2013, In: Metabolomics. 9, 1 Supplement, p. S4–S29 26 p.
Research output: Contribution to journal › Literature review › peer-review
DOI: 10.1007/s11306-012-0449-x
Published
Data-driven strategy for the discovery of potential urinary biomarkers of habitual dietary exposure
Lloyd, A., Beckmann, M., Haldar, S., Seal, C., Brandt , K. & Draper, J., 01 Feb 2013, In: American Journal of Clinical Nutrition. 97 , 2 , p. 377-389 13 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.3945/ajcn.112.048033
2012
Published
Deciphering systemic wound responses of the pumpkin extrafascicular phloem by metabolomics and stable isotope-coded protein labeling (ICPL).
Graupels, F., Sarioglu, H., Beckmann, M., Hause, B., Spannagl, M., Draper, J., Lindermayr, C. & Durner, J., Dec 2012, In: Plant Physiology. 160, 4, p. 2285-99 15 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1104/pp.112.205336
Published
EPPN: High throughput plant phenotyping facilities at Aberystwyth
Doonan, J., Howarth, C., Camargo-Rodriguez, A., Allison, G., Swain, G., Gay, A. & Draper, J., 2012.
Research output: Contribution to conference › Abstract
Published
Fourier transform ion cyclotron resonance mass spectrometry for plant metabolite profiling and metabolite identification
Allwood, J. W., Parker, D., Beckmann, M., Draper, J. & Goodacre, R., 2012, Methods in Molecular Biology. Springer Nature, p. 157-176 20 p.
Research output: Chapter in Book/Report/Conference proceeding › Chapter
DOI: 10.1007/978-1-61779-594-7_11
2011
Published
Development and validation of a standardized protocol to monitor human dietary exposure by metabolite fingerprinting of urine samples
Favé, G., Beckmann, M., Lloyd, A., Zhou, S., Harold, G., Lin, W., Tailliart, K., Xie, L., Draper, J. & Mathers, J. C., 01 Dec 2011, In: Metabolomics. 7, 4, p. 469-484 16 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1007/s11306-011-0289-0
Published
Proline betaine and its biotransformation products in fasting urine samples are potential biomarkers of habitual citrus fruit consumption
Lloyd, A., Beckmann, M., Favé, G., Mathers, J. C. & Draper, J., 01 Sep 2011, In: British Journal of Nutrition. 106, 6, p. 812-824 13 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1017/S0007114511001164
Published
Use of mass spectrometry fingerprinting to identify urinary metabolites after consumption of specific foods
Lloyd, A., Favé, G., Beckmann, M., Lin, W., Tailliart, K., Xie, L., Mathers, J. C. & Draper, J., 24 Aug 2011, In: American Journal of Clinical Nutrition. 94, 4, p. 981-991 11 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.3945/ajcn.111.017921
Published
Metabolite analysis and metabolomics in the study of biotrophic interactions between plants and microbes
Draper, J., Rasmussen, S. & Zubair, H., 17 Mar 2011, Annual Plant Reviews. Hall, R. D. (ed.). Wiley, p. 25-59 35 p.
Research output: Chapter in Book/Report/Conference proceeding › Chapter
DOI: 10.1002/9781444339956.ch2
Published
Workshop Report Metabolomics and human nutrition
Primrose, S., Draper, J., Elsom, R., Kirkpatrick, V., Mathers, J. C., Seal, C., Beckmann, M., Haldar, S., Beattie, J. H., Lodge, J. K., Jenab, M., Keun, H. & Scalbert, A., 21 Jan 2011, In: British Journal of Nutrition. 105, 8, p. 1277-1283 7 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1017/S0007114510004812
Published
Development of high throughput plant phenotyping facilities at Aberystwyth
Howarth, C., Gay, A., Draper, J. & Powell, W., 16 Jan 2011, Phenomics Workshop.
Research output: Chapter in Book/Report/Conference proceeding › Conference Proceeding (Non-Journal item)
Published
Choosing the number of labels in image segmentation
Liu, Y., Draper, J., Gay, A., Howarth, C. & Martin, R. R., 2011.
Research output: Contribution to conference › Paper
DOI: 10.1109/ETFA.2011.6059090
2010
Published
Enhancement of plant metabolite fingerprinting by machine learning
Scott, I., Vermeer, C. P., Liakata, M., Corol, D. I., Ward, J. L., Lin, W., Johnson, H. E., Whitehead, L., Kular, B., Baker, J. M., Walsh, S., Dave, A., Larson, T. R., Graham, I. A., Wang, T. L., King, R. D., Draper, J. & Beale, M. H., Aug 2010, In: Plant Physiology. 153, 4, p. 1506-1520 15 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1104/pp.109.150524
Published
The metabolic transition during disease following infection of Arabidopsis thaliana by Pseudomonas syringae pv. tomato.
Ward, J. L., Forcat, S., Beckmann, M., Bennett, M., Miller, S. J., Baker, J. M., Hawkins, N. D., Vermeer, C. P., Lu, C., Lin, W., Truman, W. M., Beale, M. H., Draper, J., Mansfield, J. W. & Grant, M., Aug 2010, In: Plant Journal. 63, 3, p. 443-457 15 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1111/j.1365-313X.2010.04254.x
Published
Metabolite fingerprinting of urine suggests breed-specific dietary metabolism differences in domestic dogs
Beckmann, M., Enot, D. P. L., Overy, D. P., Scott, I., Jones, P. G., Allaway, D. & Draper, J., Apr 2010, In: British Journal of Nutrition. 103, 8, p. 1127-1138 12 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1017/S000711450999300X
2009
Published
Metabolomic analysis reveals a common pattern of metabolic re-programming during invasion of three host plant species by Magnaporthe grisea
Parker, D. A., Beckmann, M., Zubair, H., Enot, D. P. L., Caracuel-Rios, Z., Overy, D. P., Snowdon, S., Talbot, N. J. & Draper, J., Sep 2009, In: Plant Journal. 59, 5, p. 723-737 15 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1111/j.1365-313X.2009.03912.x
Published
Metabolite signal identification in accurate mass metabolomics data with MZedDB, an interactive m/z annotation tool utilising predicted ionisation behaviour 'rules'
Draper, J., Enot, D. P. L., Parker, D. A., Beckmann, M., Snowdon, S., Lin, W. & Zubair, H., 21 Jul 2009, In: BMC Bioinformatics. 10, 227, 227.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1186/1471-2105-10-227
Published
Measurement of dietary exposure: a challenging problem which may be overcome thanks to metabolomics?
Favé, G., Beckmann, M., Draper, J. & Mathers, J. C., 01 Jun 2009, In: Genes and Nutrition. 4, 2, p. 135-141 7 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1007/s12263-009-0120-y
2008
Published
Brachypodium distachyon: making hay with a wild grass
Opanowicz, M., Vain, P., Draper, J., Parker, D. & Doonan, J., 01 Apr 2008, In: Trends in Plant Science. 13, 4, p. 172-177 6 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1016/j.tplants.2008.01.007
Published
Explanatory signal interpretation and metabolite identification strategies for nominal mass FIE-MS metabolite fingerprints
Overy, D. P., Enot, D. P. L., Tailliart, K., Jenkins, H. A., Parker, D. A., Beckmann, M. & Draper, J., 28 Feb 2008, In: Nature Protocols. 3, p. 471-485 15 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1038/nprot.2007.512
Published
High throughput, non-targeted metabolite fingerprinting using nominal mass Flow Injection Electrospray Mass Spectrometry
Beckmann, M., Parker, D. A., Enot, D. P. L., Duval, E. & Draper, J., 28 Feb 2008, In: Nature Protocols. 3, p. 486-504 19 p.
Research output: Contribution to journal › Article
DOI: 10.1038/nprot.2007.500
Published
Rice blast infection of Brachypodium distachyon as a model system to study dynamic host/pathogen interactions
Parker, D., Beckmann, M., Enot, D. P., Overy, D. P., Rios, Z. C., Gilbert, M., Talbot, N. & Draper, J., 28 Feb 2008, In: Nature Protocols. 3, p. 435-445 11 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1038/nprot.2007.499
Published
Preprocessing, classification modeling and feature selection using flow injection electrospray mass spectrometry metabolite fingerprint data
Enot, D. P., Lin, W., Beckmann, M., Parker, D., Overy, D. P. & Draper, J., 23 Feb 2008, In: Nature Protocols. 3, p. 446-470 25 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1038/nprot.2007.511
2007
Published
Soil differentiation using fingerprint Fourier transform infrared spectroscopy, chemometrics and genetic algorithm-based feature selection
Elliott, G. N., Worgan, H., Broadhurst, D. I., Draper, J. & Scullion, J., Nov 2007, In: Soil Biology and Biochemistry. 39, 11, p. 2888-2896 9 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1016/j.soilbio.2007.05.032
Published
Detecting a difference - assessing generalisability when modelling metabolome fingerprint data in longer term studies of genetically modified plants
Enot, D. P., Beckmann, M. & Draper, J., Sep 2007, In: Metabolomics. 3, 3, p. 335-347 13 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1007/s11306-007-0064-4
Published
Statistical measures for validating plant genotype similarity assessments following multivariate analysis of metabolome fingerprint data
Enot, D. P. & Draper, J., Sep 2007, In: Metabolomics. p. 349-355 7 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1007/s11306-007-0066-2
Published
Representation, comparison, and interpretation of metabolome fingerprint data for total composition analysis and quality trait investigation in potato cultivars
Beckmann, M., Enot, D. P., Overy, D. P. & Draper, J., 07 Apr 2007, In: Journal of Agricultural and Food Chemistry. 55, 9, p. 3444-3451 8 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1021/jf0701842
Published
GC-MS Peak Labeling Under ArMet
Jenkins, H. A., Beckmann, M., Draper, J. & Hardy, N., 2007, Concepts in Plant Metabolomics. Nikolau, B. J. & Wurtele, E. S. (eds.). Dordrecht: Springer Nature, p. 19-28 10 p.
Research output: Chapter in Book/Report/Conference proceeding › Chapter
DOI: 10.1007/978-1-4020-5608-6_2
2006
Published
Predicting interpretability of metabolome models based on behavior, putative identity, and biological relevance of explanatory signals
Enot, D. P., Beckmann, M., Overy, D. P. & Draper, J., 03 Oct 2006, In: Proceedings of the National Academy of Sciences of the United States of America. 103, 40, p. 14865-14870 6 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1073/pnas.0605152103
Published
Rapid characterization of microbial biodegradation pathways by FT-IR spectroscopy
Huang, W., Hopper, D. J., Goodacre, R., Beckmann, M., Singer, A. & Draper, J., 05 Jun 2006, In: Journal of Microbiological Methods. 67, 2, p. 273-280 8 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1016/j.mimet.2006.04.009
Published
Alignment of the genomes of brachypodium distachyon and temperate cereals and grasses using bacterial artificial chromosome landing with fluorescence in situ hybridization
Donnison, I., King, I. P., Wolny, E., Jenkins, G., Marasek, A., Armstead, I., Hasterok, R., Idziak, D., Draper, J. & Thomas, A., 01 May 2006, In: Genetics. 173, 1, p. 349-362 14 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1534/genetics.105.049726
Published
On the interpretation of high throughput MS based metabolomics fingerprints with Random Forest
Enot, D. P., Beckmann, M. & Draper, J., 2006, Second International Symposium, CompLife 2006, Cambridge, UK, September 27-29, 2006. Proceedings. Springer Nature, p. 226-235 10 p.
Research output: Chapter in Book/Report/Conference proceeding › Conference Proceeding (Non-Journal item)
DOI: 10.1007/11875741_22
2005
Published
The use of chemical profiling for monitoring metabolic changes in artificial soil slurries caused by horizontal gene transfer
Huang, W., Goodacre, R., Elliott, G. N., Beckmann, M., Worgan, H., Bailey, M. J., Williams, P. A., Scullion, J. & Draper, J., 23 Nov 2005, In: Metabolomics. p. 305-315 11 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1007/s11306-005-0011-1
Published
Hierarchical metabolomics demonstrates substantial compositional similarity between genetically-modified and conventional potato crops
Catchpole, G., Beckmann, M., Enot, D. P. L., Mondhe, M., Zywicki, B., Taylor, J., Hardy, N., Smith, A. R., King, R. D., Kell, D. B., Fiehn, O. & Draper, J., 04 Oct 2005, In: Proceedings of the National Academy of Sciences of the United States of America. 102, 40, p. 14458-14462 5 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1073/pnas.0503955102
Published
In planta measurements of oxidative bursts elicited by avirulent and virulent bacterial pathogens suggests that H2O2 is insufficient to elicit cell death in tobacco
Draper, J., Kenton, P. & Mur, L., 03 Feb 2005, In: Plant, Cell and Environment. p. 548-561 14 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1111/j.1365-3040.2005.01301.x
Published
Comparison of rapid liquid chromatography-electrospray ionization-tandem mass spectrometry methods for determination of glycoalkaloids in transgenic field-grown potatoes
Zywicki, B., Catchpole, G., Fiehn, O. & Draper, J., 15 Jan 2005, In: Analytical Biochemistry. 336, 2, p. 178-186 9 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1016/j.ab.2004.10.013
Published
Models and meiosis in the ’omics era
Jenkins, G., Mikhailova, E., Phillips, D., Hasterok, R., Draper, J. & Jones, N., 2005, Recent advances in genetics and breeding of the grasses. Zwierzykowski, Z. & Kosmala, A. (eds.). Polish Academy of Sciences, p. 97-104 8 p.
Research output: Chapter in Book/Report/Conference proceeding › Chapter
2004
Published
Prospects for functional genomics in a new model grass
Jenkins, G., Mur, L., Bablak, P., Hasterok, R. & Draper, J., 23 Dec 2004, Plant Functional Genomics. Leister, D. (ed.). Taylor & Francis
Research output: Chapter in Book/Report/Conference proceeding › Chapter
Published
A proposed framework for the description of plant metabolomics experiments and their results
Jenkins, H. A., Hardy, N., Beckmann, M., Draper, J., Smith, A. R., Taylor, J., Fiehn, O., Goodacre, R., Bino, R. J., Hall, R. D., Kopka, J., Lane, G. A., Lange, M., Liu, J. R., Mendes, P., Nikolau, B. J., Oliver, S. G., Paton, N. W., Rhee, S., Roessner-Tunali, U., & 7 othersSaito, K., Smedsgaard, J., Sumner, L. W., Wang, T., Walsh, S., Wurtele, E. S. & Kell, D. B., 06 Dec 2004, In: Nature Biotechnology. 22, 12, p. 1601-1606 6 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1038/nbt1041
Published
Potential of metabolomics as a functional genomics tool
Bino, R. J., Hall, R. D., Fiehn, O., Kopka, J., Saito, K., Draper, J., Nikolau, B. J., Mendes, P., Roessner-Tunali, U., Beale, M. H., Trethewey, R. N., Lange, B. M., Wurtele, E. S. & Sumner, L. W., Sep 2004, In: Trends in Plant Science. 9, 9, p. 418-425 8 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1016/j.tplants.2004.07.004
Published
Characterization of a proteinase inhibitor from Brachypodium distachyon suggests the conservation of defence signalling pathways between dicotyledonous plants and grasses
Stoddart, W. M., Xu, R. L., Routledge, A. P. M., Draper, J., Casson, S. A. & Mur, L., 07 Jun 2004, In: Molecular Plant Pathology. 5, 4, p. 267-280 14 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1111/j.1364-3703.2004.00225.x
Published
Laying the cytotaxonomic foundation of a new model grass, Brachypodium distachyon (L.) Beauv.
Hasterok, R., Draper, J. & Jenkins, G., 01 May 2004, In: Chromosome Research. 12, 4, p. 397-403 7 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1023/B:CHRO.0000034130.35983.99
Published
Magnaporthe grisea interactions with the model grass Brachypodium distachyon closely resemble those with rice (Oryza sativa)
Routledge, A. P. M., Draper, J., Talbot, N. J., Smith, J. V., Mur, L. & Shelley, G., 2004, Molecular Plant Pathology. Wiley, p. 253-265 13 p.
Research output: Chapter in Book/Report/Conference proceeding › Chapter
DOI: 10.1111/j.1364-3703.2004.00224.x
Published
The AoPR10 promoter and certain endogenous PR10 genes respond to oxidative signals in Arabidopsis
Farrell, G. G., Sturgess, F. J., Mur, L. & Draper, J., 2004, In: Molecular Plant Pathology. p. 267-280 14 p.
Research output: Contribution to journal › Article › peer-review
2003
Published
Building the molecular cytogenetic infrastructure of a new model grass
Jenkins, G., Hasterok, R. & Draper, J., 2003, Application of Novel Cytogenetic and Molecular Techniques in Genetics and Breeding of the Grasses. Zwierzykowski, Z., Surma, M. & Kachlicki, P. (eds.). Polish Academy of Sciences, p. 77-84 8 p.
Research output: Chapter in Book/Report/Conference proceeding › Chapter
Published
Food quality and microbial succession in ageing earthworm casts: standard microbial indices and metabolic fingerprinting
Scullion, J., Goodacre, R., Elliott, G. N., Huang, W., Worgan, H., Gwynn-Jones, D., Griffith, G., Darby, R., Bailey, M. J., Clegg, C. D. & Draper, J., 2003, p. 5-6. 2 p.
Research output: Contribution to conference › Paper
DOI: 10.1078/0031-4056-00276
Published
Use of earthworm casts to validate FT-IR spectroscopy as a 'sentinel' technology for high-throughput monitoring of global changes in microbial ecology
Scullion, J., Elliott, G. N., Huang, W., Goodacre, R., Worgan, H., Darby, R., Bailey, M. J., Gwynn-Jones, D., Griffith, G., Winson, M. K., Williams, P. A., Clegg, C. D. & Draper, J., 2003, In: Pedobiologia. 47, 5-6, p. 440-446 7 p.
Research output: Contribution to journal › Article
DOI: 10.1078/0031-4056-00210
2002
Published
Metabolic Engineering, metabolite profiling and machine learning to investigate the phloem-mobile signal in systemic acquired resistance in tobacco
Draper, J., Darby, R., Beckmann, M., Maddison, A., Mondhe, M., Sheldrick, C., Taylor, J., Goodacre, R. & Kell, D. B., 2002.
Research output: Contribution to conference › Paper
2001
Published
Brachypodium distachyon. A new model system for functional genomics in grasses
Bablak, P., Jenkins, G., Ghosh-Biswas, G. C., Routledge, A. P. M., Mur, L., Draper, J. & Hasterok, R., 06 Dec 2001, In: Plant Physiology. p. 1539-1555 17 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1104/pp.010196
Published
Genomic computing. Explanatory analysis of plant expression profiling data using machine learning.
Kell, D. B., Draper, J. & Darby, R., 2001, In: Plant Physiology. p. 943-951 9 p.
Research output: Contribution to journal › Article › peer-review
DOI: 10.1104/pp.126.3.943
2000
Published
A loss of resistance to avirulent bacterial pathogens in tobacco is associated with the attenuation of a salicylic acid-potentiated oxidative burst
Mur, L., Brown, I. R., Darby, R., Bestwick, C. S., Bi, Y., Mansfield, J. W. & Draper, J., 01 Sep 2000, In: Plant Journal. 23, 5, p. 309-621
Research output: Contribution to journal › Article › peer-review
DOI: 10.1046/j.1365-313x.2000.00825.x

Department of Life Sciences

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