Dr Jacqueline Daykin

Honorary Research Fellow

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Department of Computer Science

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Phone: 01970 621787
ORCID: 0000-0003-1123-8703

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  1. 2021
  2. Accepted/In press

    Computation of the suffix array, burrows-wheeler transform and FM-index in V-order

    Daykin, J., Mhaskar, N. & Smyth, W. F., 01 Jun 2021, (Accepted/In press) In: Theoretical Computer Science.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1016/j.tcs.2021.06.004
  3. 2020
  4. Published

    Concepts for Computing Patterns in 15th Century Korean Music

    Moon, S., Daykin, J. & Pu, I., 24 Oct 2020, PATTERNS 2020: The Twelfth International Conference on Pervasive Patterns and Applications. International Academy, Research, and Industry Association (IARIA), p. 6-11

    Research output: Chapter in Book/Report/Conference proceeding › Conference Proceeding (Non-Journal item)

  5. Published

    PATTERNS 2020 The Twelfth International Conferences on Pervasive Patterns and Applications

    Daykin, J. (ed.), 24 Oct 2020, International Academy, Research, and Industry Association (IARIA). Mannaert, H., Pu, I. & Daykin, J. (eds.).

    Research output: Chapter in Book/Report/Conference proceeding › Conference Proceeding (Non-Journal item)

  6. Published

    Evaluation of a Permutation-Based Evolutionary Framework for Lyndon Factorizations

    Major, L., Clare, A., Daykin, J., Mora, B., Peña Gamboa, L. & Zarges, C., 31 Aug 2020, Parallel Problem Solving from Nature – PPSN XVI: 16th International Conference, Leiden, The Netherlands, September 5-9, 2020, Proceedings. Bäck, T., Preuss, M., Deutz, A., Wang, H., Doerr, C., Emmerich, M. & Trautmann, H. (eds.). Springer Nature, p. 390-403 (Lecture Notes in Computer Science; vol. 12269).

    Research output: Chapter in Book/Report/Conference proceeding › Conference Proceeding (Non-Journal item)

    DOI: 10.1007/978-3-030-58112-1_27
  7. Accepted/In press

    On Arithmetically Progressed Suffix Arrays

    Daykin, J., Köppl, D., Kübel, D. & Stober, F., 29 Jun 2020, (Accepted/In press) Stringology.

    Research output: Chapter in Book/Report/Conference proceeding › Conference Proceeding (Non-Journal item)

  8. 2019
  9. Published

    Evolutionary Search Techniques for the Lyndon Factorization of Biosequences

    Clare, A., Daykin, J., Mills, T. & Zarges, C., 13 Jul 2019, p. 1543-1550.

    Research output: Contribution to conference › Paper › peer-review

  10. E-pub ahead of print

    Efficient pattern matching in degenerate strings with the Burrows–Wheeler transform

    Daykin, J., Groult, R., Guesnet, Y., Lecroq, T., Lefebvre, A., Léonard, M., Mouchard, L., Prieur-Gaston, É. & Watson, B., 15 Mar 2019, (E-pub ahead of print) In: Information Processing Letters.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1016/j.ipl.2019.03.003
  11. Published

    Enhanced string factoring from alphabet orderings

    Clare, A. & Daykin, J., 01 Mar 2019, In: Information Processing Letters. 143, p. 4-7 4 p.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1016/j.ipl.2018.10.011
  12. Published

    Applications of V-Order: Suffix Arrays, the Burrows-Wheeler Transform & the FM-index

    Alatabbi, A., Daykin, J., Mhaskar, N., Rahman, M. S. & Smyth, W. F., 16 Feb 2019, WALCOM: Algorithms and Computation: 13th International Conference, WALCOM 2019, Guwahati, India, February 27 – March 2, 2019, Proceedings. Das, G. K., Mandal, P. S., Mukhopadhyaya, K. & Nakano, S. (eds.). Springer Nature, p. 329-338 10 p. (WALCOM: Algorithms and Computation; no. 13).

    Research output: Chapter in Book/Report/Conference proceeding › Conference Proceeding (Non-Journal item)

    DOI: 10.1007/978-3-030-10564-8_26
  13. 2018
  14. Published

    Alphabet Reordering for the Lyndon Factorization of Biological Strings

    Clare, A. & Daykin, J., 30 Aug 2018.

    Research output: Contribution to conference › Poster

    DOI: 10.6084/m9.figshare.7029425.v1
  15. Published

    Enhanced string factoring from alphabet orderings

    Clare, A. & Daykin, J., 15 Jun 2018, arXiv, 9 p.

    Research output: Working paper

  16. Published

    A survey of string orderings and their application to the Burrows-Wheeler transform

    Daykin, J., Groult, R., Guesnet, Y., Lecroq, T., Lefebvre, A., Léonard, M. & Prieur-Gaston, É., 01 Feb 2018, In: Theoretical Computer Science. 710, p. 52-65 14 p.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1016/j.tcs.2017.02.021
  17. Published

    Reconstructing a string from its Lyndon arrays

    Daykin, J., Franek, F., Holub, J., Islam, A. S. M. S. & Smyth, W. F., 01 Feb 2018, In: Theoretical Computer Science. 710, p. 44-51 8 p.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1016/j.tcs.2017.04.008
  18. Published

    A Faster V-order String Comparison Algorithm

    Alatabbi, A., Daykin, J., Mhaskar, N., Rahman, M. S. & Smyth, W. F., 2018, p. 38–49.

    Research output: Contribution to conference › Paper › peer-review

  19. Published

    Three Strategies for the Dead-Zone String Matching Algorithm

    Daykin, J., Groult, R., Guesnet, Y., Lecroq, T., Lefebvre, A., Léonard, M., Mouchard, L., Prieur-Gaston, É. & Watson, B., 2018, p. 117–128.

    Research output: Contribution to conference › Paper › peer-review

  20. 2017
  21. Published

    Efficient pattern matching in degenerate strings with the Burrows-Wheeler transform

    Daykin, J., Groult, R., Guesnet, Y., Lecroq, T., Lefebvre, A., Léonard, M., Mouchard, L., Prieur-Gaston, É. & Watson, B., 03 Aug 2017, arXiv, p. 7.

    Research output: Working paper

  22. Indeterminate String Factorizations and Degenerate Text Transformations

    Daykin, J. & Watson, B., 01 Jun 2017, In: Mathematics in Computer Science. 11, 2, p. 209-218 10 p.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1007/s11786-016-0285-x
  23. Published

    Temporal Patterns: Smart-type Reasoning and Applications

    Chuckravanen, D., Daykin, J., Hunsdale, K. & Seeam, A., 19 Feb 2017, PATTERNS 2017: The Ninth International Conferences on Pervasive Patterns and Applications. International Academy, Research, and Industry Association (IARIA), p. 88-92

    Research output: Chapter in Book/Report/Conference proceeding › Conference Proceeding (Non-Journal item)

  24. Published

    Allen’s Interval Algebra and Smart-type Environments

    Hunsdale, K., Chuckravanen, D., Daykin, J. & Seeam, A., 2017, In: International Journal on Advances in Software. 10, 3 & 4, p. 221-230

    Research output: Contribution to journal › Article › peer-review

  25. Published

    PATTERNS 2017 The Ninth International Conferences on Pervasive Patterns and Applications

    Manaert, H. (ed.), Iwahori, Y. (ed.), Mirnig, A. (ed.), Ortis, A. (ed.), Perez, C. (ed.) & Daykin, J. (ed.), 2017, PATTERNS 2017 The Ninth International Conferences on Pervasive Patterns and Applications. Curran Associates, Inc.: International Academy, Research, and Industry Association (IARIA), (PATTERNS, International Conferences on Pervasive Patterns and Applications).

    Research output: Chapter in Book/Report/Conference proceeding › Conference Proceeding (Non-Journal item)

    DOI: toc.proceedings.com/33956webtoc.pdf
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100
Strings Mathematics
94
Burrows-Wheeler Tra... Mathematics
80
Factorization Engineering & Materials S...
45
Suffix Array Mathematics
37
Lyndon Words Mathematics
26
Sorting Engineering & Materials S...
22
Pattern Matching Mathematics
21
Transform Mathematics
18
Linear Time Mathematics
15
Mathematical transf... Engineering & Materials S...
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