Dr Amanda Clare BA (Oxon), MSc( Edinburgh), PhD (Aberytwyth)

Senior Lecturer

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Department of Computer Science

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Phone: 01970 622429
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ORCID: 0000-0001-8315-3659

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  1. 2022
  2. Published

    StORF-Reporter: Finding Genes between Genes

    Dimonaco, N., Aubrey, W., Kenobi, K., Clare, A. & Creevey, C., 01 Apr 2022, bioRxiv.

    Research output: Working paper › Preprint

    DOI: 10.1101/2022.03.31.486628
  3. Published

    No one tool to rule them all: Prokaryotic gene prediction tool annotations are highly dependent on the organism of study

    Dimonaco, N. J., Aubrey, W., Kenobi, K., Clare, A. & Creevey, C. J., 01 Mar 2022, In: Bioinformatics. 38, 5, p. 1198-1207 10 p., btab827.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1093/bioinformatics/btab827
  4. 2021
  5. Published

    No one tool to rule them all: Prokaryotic gene prediction tool performance is highly dependent on the organism of study

    Dimonaco, N., Aubrey, W., Kenobi, K., Clare, A. & Creevey, C., 23 May 2021, bioRxiv.

    Research output: Working paper

    DOI: 10.1101/2021.05.21.445150
  6. Published

    On the complexity of haplotyping a microbial community

    Nicholls, S., Aubrey, W., de Grave, K., Schietgat, L., Creevey, C. & Clare, A., 15 May 2021, In: Bioinformatics. 37, 10, p. 1360-1366 7 p., btaa977.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1101/2020.08.10.244848 10.1093/bioinformatics/btaa977
  7. Published

    CDˆ2CR: Co-reference resolution across documents and domains

    Ravenscroft, J., Arie, C., Clare, A., Dagan, I. & Liakata, M., 19 Apr 2021.

    Research output: Contribution to conference › Paper › peer-review

    DOI: 10.18653/v1/2021.eacl-main.21
  8. 2020
  9. Published

    Evaluation of a Permutation-Based Evolutionary Framework for Lyndon Factorizations

    Major, L., Clare, A., Daykin, J., Mora, B., Peña Gamboa, L. & Zarges, C., 31 Aug 2020, Parallel Problem Solving from Nature – PPSN XVI: 16th International Conference, Leiden, The Netherlands, September 5-9, 2020, Proceedings. Bäck, T., Preuss, M., Deutz, A., Wang, H., Doerr, C., Emmerich, M. & Trautmann, H. (eds.). Springer Nature, p. 390-403 (Lecture Notes in Computer Science; vol. 12269).

    Research output: Chapter in Book/Report/Conference proceeding › Conference Proceeding (Non-Journal item)

    DOI: 10.1007/978-3-030-58112-1_27
  10. Published

    Measuring prominence of scientific work in online news as a proxy for impact

    Ravenscroft, J., Clare, A. & Liakata, M., 28 Jul 2020, arXiv.

    Research output: Working paper

  11. 2019
  12. Published

    Evolutionary Search Techniques for the Lyndon Factorization of Biosequences

    Clare, A., Daykin, J., Mills, T. & Zarges, C., 13 Jul 2019, p. 1543-1550.

    Research output: Contribution to conference › Paper › peer-review

  13. Published

    Enhanced string factoring from alphabet orderings

    Clare, A. & Daykin, J., 01 Mar 2019, In: Information Processing Letters. 143, p. 4-7 4 p.

    Research output: Contribution to journal › Article › peer-review

    DOI: 10.1016/j.ipl.2018.10.011
  14. 2018
  15. Published

    Alphabet Reordering for the Lyndon Factorization of Biological Strings

    Clare, A. & Daykin, J., 30 Aug 2018.

    Research output: Contribution to conference › Poster

    DOI: 10.6084/m9.figshare.7029425.v1
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100
Simulation Mode Computer Science
88
Annotation Computer Science
84
Data Mining Computer Science
71
Classes Computer Science
70
String Computer Science
68
Functions Computer Science
60
Robot Computer Science
60
Bioinformatics Computer Science
60
Factorization Computer Science
55
Classification Computer Science
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