FungalTraitsA user-friendly traits database of fungi and fungus-like stramenopiles

Awduron Sefydliadau
  • Sergei Põlme(Awdur)
    University of Tartu
  • Kessy Abarenkov(Awdur)
    University of Tartu
  • R. Henrik Nilsson(Awdur)
    Gothenburg Global Biodiversity Centre
    Goteborgs Universitet
  • Björn D. Lindahl(Awdur)
    Swedish University of Agricultural Sciences
  • Karina Engelbrecht Clemmensen(Awdur)
    Swedish University of Agricultural Sciences
  • Havard Kauserud(Awdur)
    University of Oslo
  • Nhu Nguyen(Awdur)
    University of Hawaiʻi at Mānoa
  • Rasmus Kjøller(Awdur)
    University of Copenhagen
  • Scott T. Bates(Awdur)
    Purdue University Northwest
  • Petr Baldrian(Awdur)
    Czech Academy of Sciences
  • Tobias Guldberg Frøslev(Awdur)
    University of Copenhagen
  • Kristjan Adojaan(Awdur)
    University of Tartu
  • Alfredo Vizzini(Awdur)
    University of Turin
  • Ave Suija(Awdur)
    University of Tartu
  • Donald Pfister(Awdur)
    Harvard University
  • Hans Otto Baral(Awdur)
    Blaihofstr. 42
  • Helle Järv(Awdur)
    SYNLAB Estonia
  • Hugo Madrid(Awdur)
    Universidad Santo Tomás
    Universidad Mayor
  • Jenni Nordén(Awdur)
    FRAM - High North Research Centre for Climate and the Environment
  • Jian Kui Liu(Awdur)
    University of Electronic Science and Technology of China
  • Julia Pawlowska(Awdur)
    University of Warsaw Biological and Chemical Research Centre
  • Kadri Põldmaa(Awdur)
    University of Tartu
  • Kadri Pärtel(Awdur)
    University of Tartu
  • Kadri Runnel(Awdur)
    University of Tartu
  • Karen Hansen(Awdur)
    Swedish Museum of Natural History
  • Karl Henrik Larsson(Awdur)
    Gothenburg Global Biodiversity Centre
  • Kevin David Hyde(Awdur)
    Mae Fah Luang University
  • Marcelo Sandoval-Denis(Awdur)
    Centralbureau voor Schimmelcultures Fungal Centre (CBS-KNAW)
  • Matthew E. Smith(Awdur)
    University of Florida
  • Merje Toome-Heller(Awdur)
    Ministry for Primary Industries
  • Nalin N. Wijayawardene(Awdur)
    Qujing Normal University
  • Nelson Menolli(Awdur)
    Instituto Federal de Educação, Ciência e Tecnologia de São Paulo
    Instituto de Botânica de Sao Paulo
  • Nicole K. Reynolds(Awdur)
    University of Florida
  • Rein Drenkhan(Awdur)
    Estonian University of Life Sciences
  • Sajeewa S.N. Maharachchikumbura(Awdur)
    University of Electronic Science and Technology of China
  • Tatiana B. Gibertoni(Awdur)
    Universidade Federal de Pernambuco
  • Thomas Læssøe(Awdur)
    University of Copenhagen
  • William Davis(Awdur)
    Oak Ridge Institute for Science and Education
  • Yuri Tokarev(Awdur)
    All-Russian Institute of Plant Protection
  • Adriana Corrales(Awdur)
    Universidad del Rosario
  • Adriene Mayra Soares(Awdur)
    Universidade Federal Rural da Amazônia
  • Ahto Agan(Awdur)
    University of Tartu
  • Alexandre Reis Machado(Awdur)
    Universidade Federal de Pernambuco
  • Andrés Argüelles-Moyao(Awdur)
    Ciudad Universitaria
  • Andrew Detheridge(Awdur)
  • Angelina de Meiras-Ottoni(Awdur)
    Universidade Federal de Pernambuco
  • Annemieke Verbeken(Awdur)
    Ghent University
  • Arun Kumar Dutta(Awdur)
    West Bengal State University
  • Bao Kai Cui(Awdur)
    Beijing Forestry University
  • C. K. Pradeep(Awdur)
    Jawaharlal Nehru Tropical Botanic Garden & Research Institute (JNTBGRI)
  • César Marín(Awdur)
    Universidad de O’Higgins
    Pontificia Universidad Católica de Chile
  • Daniel Stanton(Awdur)
    University of Minnesota Twin Cities
  • Daniyal Gohar(Awdur)
    University of Tartu
  • Dhanushka N. Wanasinghe(Awdur)
    Kunming Institute of Botany
  • Eveli Otsing(Awdur)
    University of Tartu
  • Farzad Aslani(Awdur)
    University of Tartu
  • Gareth Griffith(Awdur)
  • Thorsten H. Lumbsch(Awdur)
    The Field Museum
  • Hans Peter Grossart(Awdur)
    Leibniz Institute of Freshwater Ecology and Inland Fisheries
    University of Potsdam
  • Hossein Masigol(Awdur)
    University of Guilan
  • Ina Timling(Awdur)
    University of Alaska-Fairbanks
  • Inga Hiiesalu(Awdur)
    University of Tartu
  • Jane Oja(Awdur)
    University of Tartu
  • John Y. Kupagme(Awdur)
    University of Tartu
  • József Geml(Awdur)
    Eszterházy Károly University
  • Julieta Alvarez-Manjarrez(Awdur)
    Ciudad Universitaria
  • Kai Ilves(Awdur)
    University of Tartu
  • Kaire Loit(Awdur)
    Estonian University of Life Sciences
  • Kalev Adamson(Awdur)
    Estonian University of Life Sciences
  • Kazuhide Nara(Awdur)
    University of Tokyo
  • Kati Küngas(Awdur)
    University of Tartu
  • Keilor Rojas-Jimenez(Awdur)
    Universidad de Costa Rica
  • Krišs Bitenieks(Awdur)
    Latvian State Forest Research Institute “Silava”
  • Laszlo Irinyi(Awdur)
    University of Sydney
    Westmead Hospital
  • László Laszlo Nagy(Awdur)
    Biological Research Center Szeged
  • Liina Soonvald(Awdur)
    Estonian University of Life Sciences
  • Li Wei Zhou(Awdur)
    Institute of Microbiology Chinese Academy of Sciences
  • Lysett Wagner(Awdur)
    Leibniz Institute forNatural Product Research and Infection Biology – Hans Knöll Institute (HKI)
  • M. Catherine Aime(Awdur)
    Purdue University
  • Maarja Öpik(Awdur)
    University of Tartu
  • María Isabel Mujica(Awdur)
    Pontificia Universidad Católica de Chile
  • Martin Metsoja(Awdur)
    University of Tartu
  • Martin Ryberg(Awdur)
    Uppsala University
  • Martti Vasar(Awdur)
    University of Tartu
  • Masao Murata(Awdur)
    University of Tokyo
  • Matthew P. Nelsen(Awdur)
    The Field Museum
  • Michelle Cleary(Awdur)
    Swedish University of Agricultural Sciences
  • Milan C. Samarakoon(Awdur)
    Mae Fah Luang University
  • Mingkwan Doilom(Awdur)
    Kunming Institute of Botany
  • Mohammad Bahram(Awdur)
    University of Tartu
    Swedish University of Agricultural Sciences
  • Niloufar Hagh-Doust(Awdur)
    University of Tartu
  • Olesya Dulya(Awdur)
    University of Tartu
    Institute of Plant and Animal Ecology
  • Peter Johnston(Awdur)
    Manaaki Whenua - Landcare Research
  • Petr Kohout(Awdur)
    Czech Academy of Sciences
  • Qian Chen(Awdur)
    Institute of Microbiology Chinese Academy of Sciences
  • Qing Tian(Awdur)
    Mae Fah Luang University
  • Rajasree Nandi(Awdur)
    University of Chittagong
  • Rasekh Amiri(Awdur)
    University of Tartu
  • Rekhani Hansika Perera(Awdur)
    Mae Fah Luang University
  • Renata dos Santos Chikowski(Awdur)
    Universidade Federal de Pernambuco
  • Renato L. Mendes-Alvarenga(Awdur)
    Universidade Federal de Pernambuco
  • Roberto Garibay-Orijel(Awdur)
    Ciudad Universitaria
  • Robin Gielen(Awdur)
    University of Tartu
  • Rungtiwa Phookamsak(Awdur)
    Kunming Institute of Botany
  • Ruvishika S. Jayawardena(Awdur)
    Mae Fah Luang University
  • Saleh Rahimlou(Awdur)
    University of Tartu
  • Samantha C. Karunarathna(Awdur)
    Kunming Institute of Botany
  • Saowaluck Tibpromma(Awdur)
    Kunming Institute of Botany
  • Shawn P. Brown(Awdur)
    University of Memphis
  • Siim Kaarel Sepp(Awdur)
    University of Tartu
  • Sunil Mundra(Awdur)
    University of Oslo
    United Arab Emirates University
  • Zhu Hua Luo(Awdur)
    Ministry of Natural Resources
  • Tanay Bose(Awdur)
    University of Pretoria
  • Tanel Vahter(Awdur)
    University of Tartu
  • Tarquin Netherway(Awdur)
    Swedish University of Agricultural Sciences
  • Teng Yang(Awdur)
    Chinese Academy of Sciences
  • Tom May(Awdur)
    Royal Botanic Gardens Victoria
  • Torda Varga(Awdur)
    Biological Research Center Szeged
  • Wei Li(Awdur)
    Ocean University of China
  • Victor Rafael Matos Coimbra(Awdur)
    Universidade Federal de Pernambuco
  • Virton Rodrigo Targino de Oliveira(Awdur)
    Universidade Federal de Pernambuco
  • Vitor Xavier de Lima(Awdur)
    Universidade Federal de Pernambuco
  • Vladimir S. Mikryukov(Awdur)
    University of Tartu
  • Yongzhong Lu(Awdur)
    Guizhou Institute of Technology
  • Yosuke Matsuda(Awdur)
    Mie University
  • Yumiko Miyamoto(Awdur)
    Hokkaido University
  • Urmas Kõljalg(Awdur)
    University of Tartu
  • Leho Tedersoo(Awdur)
    University of Tartu
Math Erthygl
Iaith wreiddiolSaesneg
Tudalennau (o-i)1-16
Nifer y tudalennau16
CyfnodolynFungal Diversity
Cyfrol105
Rhif y cyfnodolyn1
Dangosyddion eitem ddigidol (DOIs)
StatwsCyhoeddwyd - 19 Ion 2021
Cysylltiadau
Cysylltiad parhaol
Gweld graff cysylltiadau
Fformatau enwi

Crynodeb

The cryptic lifestyle of most fungi necessitates molecular identification of the guild in environmental studies. Over the past decades, rapid development and affordability of molecular tools have tremendously improved insights of the fungal diversity in all ecosystems and habitats. Yet, in spite of the progress of molecular methods, knowledge about functional properties of the fungal taxa is vague and interpretation of environmental studies in an ecologically meaningful manner remains challenging. In order to facilitate functional assignments and ecological interpretation of environmental studies we introduce a user friendly traits and character database FungalTraits operating at genus and species hypothesis levels. Combining the information from previous efforts such as FUNGuild and FunFun together with involvement of expert knowledge, we reannotated 10,210 and 151 fungal and Stramenopila genera, respectively. This resulted in a stand-alone spreadsheet dataset covering 17 lifestyle related traits of fungal and Stramenopila genera, designed for rapid functional assignments of environmental studies. In order to assign the trait states to fungal species hypotheses, the scientific community of experts manually categorised and assigned available trait information to 697,413 fungal ITS sequences. On the basis of those sequences we were able to summarise trait and host information into 92,623 fungal species hypotheses at 1% dissimilarity threshold.

Allweddeiriau

Dogfennau